Ah bummer.
If I understand the optics control board correctly, there should be a light on it that will turn on and off when something is passed through the optic beam. If that is true, you might be able to loosen them up, align them by hand and watch the light to see if it turns on or off when you have successfully aligned them.
good luck!
From Pin Wiki:
"
4.9.3 Optical Switch Problems
If the associated LED on the opto controller board lights up when the light beam of an optic switch pair is broken, the switch pair is functioning properly. However, if the associated LED on the opto controller board stays on, and a ball is not located at the optic switch pair, there is something wrong with the optic pair. Typically, something is either blocking the light beam, or the receiver or transmitter needs to be cleaned. To clean either the receiver or transmitter optos, use a Q-Tip dipped in Windex to remove dust and dirt. Of course if the LED does not light up at all, there is something wrong with the optic pair.
Testing the transmitter is quite simple. An item which is readily available, a digital camera, can be used. Just aim the camera at the transmitter opto, and look at the opto through the camera's screen. If the opto is on, it will appear as if it is lit up with a purplish-pink hue. To test the opto receiver, an incandescent flashlight can be used. An LED flashlight may or may not work, and is not as effective for this test. Put the game in switch test mode, and aim the flashlight directly at the opto receiver. If the switch shows as closed in switch test, and / or the associated LED on the opto controller board lights, the receiver portion of the optic pair is functioning properly.
In any of the above cases, there could be a problem instead with the opto controller board. If at all possible, swap the connectors of the optic pairs from a known working opto controller board to the possibly questionable opto controller board.
Should either the transmitter or receiver fail, replacement components are still readily available. Both components can be purchased from GPE. Here are links for the
transmitter(QED123) and
receiver (QSD124)."
Link:
http://www.pinwiki.com/wiki/index.php?title=Gottlieb_System_3